BIOL338: Genomics & Bioinformatics @ Carleton College¶
Protocols:
- Week 3: Introduction to Unix/Linux and the Server; Assembly with IDBA-UD; ORF Calling and Annotation with Prokka
- Week 4: Local alignments and sequence search with BLAST, global alignments with MUSCLE, and making trees with RAxML
- Week 5: Mapping with bowtie2
- Week 6: Classifying taxonomy of short reads with mothur
- Week 7: Binning genomes with anvi’o
Reference:
More info: