BIOL338: Genomics & Bioinformatics @ Carleton College

Protocols:

• Week 3: Introduction to Unix/Linux and the Server; Assembly with IDBA-UD; ORF Calling and Annotation with Prokka
• Week 4: Local alignments and sequence search with BLAST, global alignments with MUSCLE, and making trees with RAxML
• Week 5: Mapping with bowtie2
• Week 6: Classifying taxonomy of short reads with mothur
• Week 7: Binning genomes with anvi’o

Reference:

• General Stuff
• Bioinformatics Tools
• Legacy Items

More info:

• Contributing
• Authors